Research

Publications

  1. Bernadette J. Stolz, Jagdeep Dhesi, Joshua A. Bull, Heather A. Harrington, Helen M. Byrne, and Iris H. R. Yoon, Relational persistent homology for multispecies data with application to the tumour microenvironment, Bulletin of Mathematical Biology 86 (11): 128, 2024.

  2. Jakub Köry, Vedang Narain, Bernadette J. Stolz, Jakob Kaeppler, Bostjan Markelc, Ruth J. Muschel, Philip K. Maini, Joe M. Pitt-Francis, and Helen M. Byrne, Enhanced perfusion following exposure to radiotherapy: a theoretical investigation, PLOS Computational Biology 20 (2): e1011252, 2024.

  3. Salvador Chulián, Bernadette J. Stolz, Alvaro Martinez-Rubio, Cristina Blazquez Goni, Juan Francisco Rodriguez Gutierrez, Teresa Caballero Velazquez, Agueda Molinos Quintana, Manuel Ramírez Orellana, Ana Castillo Robleda, José Luis Fuster Soler, Alfredo Minguela Puras, María Victoria Martínez Sánchez, María Rosa, Víctor M. Pérez-García, and Helen M. Byrne, The shape of cancer relapse: Topological data analysis predicts recurrence in paediatric acute lymphoblastic leukaemia, PLOS Computational Biology 19 (8): e1011329, 2023.

  4. Bernadette J. Stolz, Outlier-robust subsampling techniques for persistent homology, Journal of Machine Learning Research 24 (90): 1-35, 2023; selected for presentation at ICLR 2024.

  5. Hosuk Ryou, Korsuk Sirinukunwattana, Alan Aberdeen, Gillian Grindstaff, Bernadette J. Stolz, Helen Byrne, Heather A. Harrington, Nikolaos Sousos, Anna L. Godfrey, Claire N. Harrison, Bethan Psaila, Adam J. Mead, Gabrielle Rees, Gareth D. H. Turner, Jens Rittschner, and Daniel Royston, Continuous indexing of fibrosis (CIF): Improving the assessment and classification of MPN patients, Leukemia 37 (2): 348-358, 2022.

  6. Bernadette J. Stolz, Jakob Kaeppler, Bostjan Markelc, Franziska Mech, Florian Lipsmeier, Ruth J. Muschel, Helen M. Byrne, and Heather A. Harrington, Multiscale topology characterises dynamic tumour vascular networks, Science Advances 8 (23): eabm2456, 2022.

  7. Emma L. Brown, Thierry L. Lefebvre, Paul W. Sweeney, Bernadette J. Stolz, Janek Gröhl, Lina Hacker, Ziqiang Huang, Dominique-Laurent Couturier, Heather A. Harrington, Helen M. Byrne, and Sarah M. Bohndiek, Quantification of vascular networks in photoacoustic mesoscopy, Photoacoustics 26: 100357, 2022.

  8. John T. Nardini, Bernadette J. Stolz, Kevin B. Flores, Heather A. Harrington, and Helen M. Byrne, Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis, PLOS Computational Biology 17 (6): e1009094, 2021.

  9. Bernadette J. Stolz, Tegan Emerson, Satu Nahkuri, Mason A. Porter, and Heather A. Harrington, Topological data analysis of task-based fMRI data from experiments on schizophrenia, Journal of Physics: Complexity 2 (3): 035006, 2021.

  10. Bernadette J. Stolz, Jared Tanner, Heather A. Harrington, and Vidit Nanda, Geometric anomaly detection in data, Proceedings of the National Academy of Sciences 117 (33): 19664-19669, 2020.

  11. Helen M. Byrne, Heather A. Harrington, Ruth Muschel, Gesine Reinert, Bernadette J. Stolz, and Ulrike Tillmann, Topology characterises tumour vasculature, Mathematics Today 55 (5): 206-210, 2019.

  12. Bernadette J. Stolz, Heather A. Harrington, and Mason A. Porter, Persistent homology of time-dependent functional networks constructed from coupled time series, Chaos: An Interdisciplinary Journal of Nonlinear Science 27 (4): 047410, 2017.

Preprints

  1. Joshua A. Bull, Eoghan J. Mulholland, Joshua W. Moore, Jesús J. Bosque, Bernadette J. Stolz, Joseph Boen, Holly R. Eggington, Hayley L. Belnoue-Davis, Helen Jones, Chandler D. Gatenbee, Alexander R. A. Anderson, Alistair Easton, Peter Todd, Christopher Cunningham, Stephen Taylor, Helen M. Byrne, and Simon J. Leedham, Integrating diverse statistical methods to analyse stage-discriminatory cell interactions in colorectal neoplasia, 2024.06.02.597010, 2024.

Theses

  1. Bernadette J. Stolz-Pretzer. Global and local persistent homology for the shape and classification of biological data. PhD thesis, University of Oxford, 2019.

  2. Bernadette J. Stolz. Computational topology in neuroscience. Master’s thesis, University of Oxford, 2014.